From the information provided it is likely the newly transplanted arborvitae became waterlogged and a loss of roots occurred. Yellowing needles can be a sign of either too little or too much soil moisture. Plants should on average receive about 1 inch of water a week once established, depending on soil type. New plantings need to be watered so that the transplanted roots are kept moist, but not waterlogged. While convenient, irrigation systems are hard to manage properly in situations like this. You should consider digging a small hole as deep as the root balls and see if any water collects in the bottom (way too wet). if this is the case, you can dig the hole a little deeper and allow water to collect and physically remove it. this would need to be done for each plant. the hole will also allow soil oxygen back into the soil, something roots require to move both water and nutrients upwards into the plant.